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> esearch -db sra -query "SAMN02324197"

<ENTREZ_DIRECT>
  <Db>sra</Db>
  <WebEnv>MCID_6243c437ec6f7a20fc0f452a</WebEnv>
  <QueryKey>1</QueryKey>
  <Count>1</Count>
  <Step>1</Step>
</ENTREZ_DIRECT>

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> esearch -db sra -query "SAMN02324197" | \
         efetch -format docsum

<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE DocumentSummarySet>
<DocumentSummarySet status="OK">
  <DbBuild>Build220329-1838m.1</DbBuild>
  <DocumentSummary>
    <Id>477293</Id>
    <ExpXml>
      <Summary>
        <Title>Genome sequence of Apis mellifera worker from the A lineage [Africa]-S300</Title>
        <Platform instrument_model="Illumina HiSeq 2000">ILLUMINA</Platform>
        <Statistics total_runs="1" total_spots="195798261" total_bases="9789913050" total_size="7003530482" load_done="true" cluster_name="public"/>
      </Summary>
      <Submitter acc="SRA096086" center_name="York University" contact_name="Amro Zayed" lab_name="Zayed Lab"/>
      <Experiment acc="SRX339524" ver="2" status="public" name="Genome sequence of Apis mellifera worker from the A lineage [Africa]-S300"/>
      <Study acc="SRP029219" name="Apis mellifera population genomics project"/>
      <Organism taxid="7460" ScientificName="Apis mellifera"/>
      <Sample acc="SRS473244" name=""/>
      <Instrument ILLUMINA="Illumina HiSeq 2000"/>
      <Library_descriptor>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </Library_descriptor>
      <Bioproject>PRJNA216922</Bioproject>
      <Biosample>SAMN02324197</Biosample>
    </ExpXml>
    <Runs>
      <Run acc="SRR957095" total_spots="195798261" total_bases="9789913050" load_done="true" is_public="true" cluster_name="public" static_data_available="true"/>
    </Runs>
    <ExtLinks/>
    <CreateDate>2014/02/05</CreateDate>
    <UpdateDate>2013/08/26</UpdateDate>
  </DocumentSummary>
</DocumentSummarySet>

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> esearch -db sra -query "SAMN02324197" | \
         efetch -format docsum | \
         xtract -pattern DocumentSummary -element Bioproject,Biosample,Title

PRJNA216922     SAMN02324197    Genome sequence of Apis mellifera worker from the A lineage [Africa]-S300

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> esearch -db sra -query "SAMN02324197" | \
         efetch -format docsum | \
         xtract -pattern DocumentSummary -element Bioproject,Biosample,Title -block Runs -element Run@acc

PRJNA216922     SAMN02324197    Genome sequence of Apis mellifera worker from the A lineage [Africa]-S300       SRR957095

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> cat biosample.ids.list| head -4 | xargs -L 1 -i sh -c "esearch -db sra -query {} | efetch -format docsum | xtract -pattern DocumentSummary -element Bioproject,Biosample,Title -block Runs -element Run@acc"

PRJNA418874     SAMN08038389    Resequencing of Apis cerana: adult female body  SRR6301311
PRJNA418874     SAMN08038319    Resequencing of Apis cerana: adult female body  SRR6301296
PRJNA418874     SAMN08038413    Resequencing of Apis cerana: adult female body  SRR6301438
PRJNA418874     SAMN08038427    Resequencing of Apis cerana: adult female body  SRR6301396

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efetch -db sra -format docsum -id SRP043122 |  xtract -pattern DocumentSummary -element Bioproject,Study@acc,Study@name,Sample@acc,Sample@name,Title,Platform@instrument_model,LIBRARY_CONSTRUCTION_PROTOCOL -block Runs  -sep "," -element Run@acc

PRJNA252516     SRP043122       Exosomal miR-1290 and miR-375 as prognostic markers in castrate resistant prostate cancer     SRS634616       GSM1410446: PC8; Homo sapiens; ncRNA-Seq        Illumina HiSeq 2000   Exosome isolation and RNA extraction was reported previously. The plasma exosomes were isolated using ExoQuick Solution (SBI, Mountain View, CA). RNA was extracted with the miRNeasy Micro Kit (QIAGEN, Valencia, CA). RNA quantity was determined by a fluorometer (Qubit 2.0, Life Technologies, Carlsbad, CA). Agilent Small RNA Chip (Agilent Technologies, Santa Clara, CA) was used to determine RNA quality. Small RNA libraries were constructed with 2ng exosomal RNA from each patient as starting material following the instruction of the NEBNext Multiplex Small RNA Library Prep Set for Illumina (NEB). Absolute quantities of each indexed library were determined by real-time qPCR using KAPA Library Quantification Kit. Equally 2nM of each index library was pooled and submitted for sequencing using the Illumina HiSeq2000 platform.  SRR1379721,SRR1379722,SRR1379723,SRR1379724
PRJNA252516     SRP043122       Exosomal miR-1290 and miR-375 as prognostic markers in castrate resistant prostate cancer     SRS634617       GSM1410447: PC9; Homo sapiens; ncRNA-Seq        Illumina HiSeq 2000   Exosome isolation and RNA extraction was reported previously. The plasma exosomes were isolated using ExoQuick Solution (SBI, Mountain View, CA). RNA was extracted with the miRNeasy Micro Kit (QIAGEN, Valencia, CA). RNA quantity was determined by a fluorometer (Qubit 2.0, Life Technologies, Carlsbad, CA). Agilent Small RNA Chip (Agilent Technologies, Santa Clara, CA) was used to determine RNA quality. Small RNA libraries were constructed with 2ng exosomal RNA from each patient as starting material following the instruction of the NEBNext Multiplex Small RNA Library Prep Set for Illumina (NEB). Absolute quantities of each indexed library were determined by real-time qPCR using KAPA Library Quantification Kit. Equally 2nM of each index library was pooled and submitted for sequencing using the Illumina HiSeq2000 platform.  SRR1379725,SRR1379726,SRR1379727